Derek Cole Aguiar
Associate Professor/Computing

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Scholarly Contributions

60 Scholarly Contributions

20
Journal Articles
16
Conference Proceedings
13
Poster/Presentations
6
Other Scholarly Works
3
Teaching Materialss
2
Book Chapters
Practical Computational Methods for Regulatory Genomics: A cisGRN-Lexicon and cisGRN-Browser for Gene Regulatory Networks
2010
Ryan Tarpine, Derek Aguiar, Kyle Schutter, Sorin Istrail
Research Type: Book Chapter

The Clark phase-able sample size problem: long-range phasing and loss of heterozygosity in GWAS
2010
Ryan Tarpine, Sorin Istrail, Bjarni V Halld\'orsson$^*$, Derek Aguiar$^*$
Research Type: Conference Proceedings

Haplotype phasing by multi-assembly of shared haplotypes: phase-dependent interactions between rare variants
2011
Bjarni V Halld\'orsson$^*$, Derek Aguiar$^*$, Sorin Istrail
Research Type: Book Chapter

DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism
2012
Derek Aguiar, Bjarni V Halld\'orsson, Eric M Morrow, Sorin Istrail
Research Type: Journal Article

HapCompass: a fast cycle basis algorithm for accurate haplotype assembly of sequence data
2012
Derek Aguiar, Sorin Istrail
Research Type: Journal Article

CYRENE cis-Regulatory Genome Browser
2012
Ryan Tarpine, Sorin Istrail, Derek Aguiar
Research Type: Teaching Materials

Haplotype assembly in polyploid genomes and identical by descent shared tracts
2013
Sorin Istrail, Derek Aguiar
Research Type: Journal Article

A quantitative reference transcriptome for Nematostella vectensis earlyembryonic development: a pipeline for de novo assembly in emergingmodel systems
2013
Joel Smith, Derek Aguiar$^*$, Sarah ambiguous, Sorin Istrail
Research Type: Journal Article

Tractatus: an exact and subquadratic algorithm for inferring identity-by-descent multi-shared haplotype tracts
2013
Derek Aguiar, Sorin Istrail
Research Type: Teaching Materials

Tumor haplotype assembly algorithms for cancer genomics
2014
Derek Aguiar, Sorin Istrail, Wendy SW Wong
Research Type: Conference Proceedings

Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype Tracts.
2014
Eric M Morrow, Sorin Istrail, Derek Aguiar
Research Type: Conference Proceedings

Transcriptome of American oysters, Crassostrea virginica, in response to bacterial challenge: insights into potential mechanisms of disease resistance
2014
Chamilani Nikapitiya, Christopher E Lane, Sorin Istrail, Ian C McDowell, Marta Gomez-Chiarri, Derek Aguiar
Research Type: Journal Article

Genome-wide algorithms for haplotype assembly, haplotype phasing, and IBD inference
2014
Derek Aguiar
Research Type: Other Scholarly Work

HapCompass: fast cycle basis algorithms for accurate diploid and polyploid haplotype assembly
2016
Sorin Istrail, Derek Aguiar
Research Type: Teaching Materials

Bayesian nonparametric discovery of isoforms and individual specific quantification
2018
Derek Aguiar, Fantine Mordelet, Li-Fang Cheng, Bianca Dumitrascu, Athma Pai, Barbara Engelhardt
Research Type: Journal Article

Combinatorial and statistical prediction of gene expression from haplotype sequence
2020
Derek Cole Aguiar, Pinar Demetci, Berk A Alpay, Sorin Istrail
Research Type: Conference Proceedings

Robust and interpretable statistical genetic modelling
2020
Bianca Dumitrascu, Barbara E. Engelhardt, Derek Aguiar, Devin J. McConnell
Research Type: Other Scholarly Work

Bayesian Nonparametric Modelling and Scalable Inference In Large-Scale Genomics Data
2020
Derek C Aguiar
Research Type: Poster/Presentation

Bayesian machine learning in large models with applications in genomics
2020
Derek C Aguiar
Research Type: Poster/Presentation

Case-level Prediction of Motion Outcomes in Civil Litigation
2021
Devin J McConnell, Derek C Aguiar, James Zhu, Sachin S Pandya
Research Type: Conference Proceedings