Jill L. Wegrzyn
Associate Professor/Ecology and Evolutionary Bio

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Scholarly Contributions

163 Scholarly Contributions

89
Journal Articles
69
Poster/Presentations
2
Other Scholarly Works
2
Conference Proceedings
1
Book Chapter
iPlant SSWAP (Simple Semantic Web Architecture and Protocol) enables semantic pipelines for biodiversity
2024
Jill Wegrzyn, Hans Vasquez-Gross, Damian DG Gessler, Evren Sirin, Blazej Bulka, John Yu
Research Type: Conference Proceedings

iPlant Collaborator: CartograTree for Tree Biology
2013
Jill Wegrzyn
Research Type: Other Scholarly Work

gFACs: Gene Filtering, Analysis, and Conversion to Unify Genome Annotations Across Alignment and Gene Prediction Frameworks
2019
Jill Wegrzyn, Madison Caballero
Research Type: Journal Article

YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut
2015
Pedro José Martínez-García, Keith Woeste, Abhaya M. Dandekar, Russell L. Reagan, Timothy Butterfield, Mallikarjuna Aradhaya, Basuthkar J. Rao, Jill Wegrzyn, David Neale, Monica Britton, Charles A. Leslie, Sandeep Chakraborty
Research Type: Journal Article

When local means local: Polygenic signatures of local adaptation within whitebark pine (Pinus albicaulis Englm.) across the Lake Tahoe Basin, USA
2016
B Lind, P Maloney, A Eckert, Jill Wegrzyn, D Vogler, C Friedline
Research Type: Poster/Presentation

When local means local: Polygenic signatures of local adaptation within whitebark pine (Pinus albicaulis Engelm.) across the Lake Tahoe Basin, USA | bioRxiv
2017
Jill Wegrzyn
Research Type: Journal Article

Welcome to the big leaves: best practices for improving genome annotation in non-model plant genomes.
2023
Jill Wegrzyn
Research Type: Journal Article

Water availability drives signatures of local adaptation in whitebark pine (Pinus albicaulis Engelm.) across fine spatial scales of the Lake Tahoe Basin, USA
2017
Patricia E. Maloney, Christopher J. Friedline, Andrew J. Eckert, Detlev R. Vogler, Jill Wegrzyn, Brandon M. Lind, David B. Neale
Research Type: Journal Article

W959 CartograTree Workflows with Tripal API for Association Mapping in Forest Trees
2017
Qiaoshan Lin, Damian Gessler, Nic Herndon, Emily Grau, Alex Feltus, Dorrie Main, Michael Wynne, Sook Jung, Jill Wegrzyn, Stephen P Ficklin, Margaret Staton
Research Type: Poster/Presentation

W956 Tripal Introduction and Core Development Efforts
2017
Jill Wegrzyn, Ming Chen, Sook Jung, Dorrie Main, Margaret Staton, Alex Feltus, Lacey-Anne Sanderson, Stephen P Ficklin, Kuang-Ching Wang, Connor Wytko, Brian Soto, Chun-Huai Cheng, Nick Watts
Research Type: Poster/Presentation

W352: A Reference Draft Genome for Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco)
2017
Jill Wegrzyn, Sumaira Zaman, Daniela Puiu, Charles H Langley, Pat McGuire, Daniel Gonzalez-Ibeas, Robin Paul, Mihaela Pertea, U Uzay Sezen, Nicholas Wheeler, Claudio Casola, Richard Cronn, M Yandell, Steven L Salzberg, Kristian A Stevens, Tomasz Koralewski, James A Yorke, Carson Holt, Marc Crepeau, Gaurav Sablok, Aleksey Zimin, Charis Cardeno, David B Neale
Research Type: Poster/Presentation

W311 TreeGenes: A Comprehensive Resource for Forest Tree Genomics
2015
Emily Grau, Damian Gessler, Hans Vasquez-Gross, Jacob Zieve, Jill Wegrzyn, David B Neale, John Liechty
Research Type: Poster/Presentation

W080 Structural and Functional Annotation of Model and Non-Model Organisms with GenSAS v5.0, a Web-Based Annotation Platform
2017
David B Neale, Sook Jung, Jill Wegrzyn, Taein Lee, Jodi L Humann, Chun-Huai Cheng, Stephen P Ficklin, Heidi Hough, Dorrie Main
Research Type: Poster/Presentation

Virus evolution affected early COVID-19 spread
2020
Derek Corcoran, Cory Merow, Jill Wegrzyn, Mark C Urban
Research Type: Journal Article

Use of CartograTree to Explore Forest Tree Genomes, Phenotypes, and Environment
2013
Jill Wegrzyn, Ben Figueroa, Damian Gessler, David B Neale, Hans Vasquez-Gross, John Yu
Research Type: Poster/Presentation

Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation.
2014
K A Stevens, S L Salzberg, A V Zimin, H A Vasquez-Gross, D Puiu, K Mockaitis, J D Liechty, L S Wu, C Holt, M W Crepeau, D B Neale, J A Yorke, P J Dejong, P J Martínez-García, B Y Lin, C H Langley, D Main, Jill Wegrzyn, C A Loopstra, J J Zieve, M Yandell, W M Dougherty
Research Type: Journal Article

Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases
2021
Jill Wegrzyn
Research Type: Journal Article

Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases
2019
Helena Rasche, Kirstin Bett, F Alex Feltus, Sook Jung, Shawna Spoor, Anthony Bretaudeau, Abdullah Almsaeed, Bradford Condon, Lacey-Anne Sanderson, Chun-Huai Cheng, Margaret Staton, Stephen Ficklin, Jill Wegrzyn, Dorrie Main, Ming Chen
Research Type: Journal Article

Tripal and Galaxy: supporting reproducible scientific workflows for community biological databasesAuthors
2020
Stephen P Ficklin, Brian Soto, Ming Chen, Sook Jung, Bradford Condon, Meg Staton, Abdullah Almsaeed, Connor Wytko, Heidi Hough, Shawna Spoor, Nic Herdon, F Alex Feltus, Dorrie Main, Jill Wegrzyn
Research Type: Journal Article

Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps
2019
Jodi L Humann, Jill Wegrzyn, Chun_huai Cheng, Jing Yu, Stephen P Ficklin, Bradford Condon, Heidi Hough, Taein Lee, Katheryn Buble, Margaret E Staton, Dorrie Main, Sook Jung
Research Type: Journal Article