Jonathan L. Klassen
Associate Professor/Molecular and Cell Biology

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Scholarly Contributions

39 Scholarly Contributions

32
Journal Articles
6
Poster/Presentations
1
Technology
Propagating annotations on molecular networks using in silico fragmentation
2018
Pieter C Dorrestein, Justin JJ van der Hooft, Andres Mauricio Caraballo-Rodriguez, Norberto Peporine Lopes, Mingxun Wang, Marcy J Balunas, Jonathan L Klassen, Ricardo R da Silva, Louis-Felix Nothias, Evan Fox
Research Type: Journal Article

Defining Microbiome Function
2018
Jonathan L Klassen
Research Type: Journal Article

High-Quality Draft Genome Sequences of Eight Bacteria Isolated from Fungus Gardens Grown by Trachymyrmex septentrionalis Ants
2018
Hannah Beatty, Manoj Pillay, Jonathan L Klassen, Dimitrios Stamatis, Natalia Ivanova, Nikos Kyrpides, Natalia Mikhailova, Philip Gialopsos, Krishnaveni Palaniappan, Neha Varghese, Alicia Clum, Tanja Woyke, Chris Daum, Marcel Huntemann, TBK Reddy, Vivian Ng, Alexander Spunde, Sarah Kopac
Research Type: Journal Article

ClustCompare
2018
Jonathan L Klassen
Research Type: Technology

https://github.com/klassen-lab/ClustCompare
Efomycins K and L from a termite-associated Streptomyces sp. M56 and their putative biosynthetic origin
2019
Ki Hyun Kim, Seoung Rak Lee, Christine Beemelmanns, Michael Poulsen, Jonathan L Klassen
Research Type: Journal Article

MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data
2019
Fernando Vargas, Justin JJ van der Hooft, Morgan Panitchpakdi, Lara Labarta-Bajo, Kathleen E Kyle, Jaramie D Watrous, Carolina S Carpenter, Daniel Petras, Emily C Gentry, Mingxun Wang, Elina I Zuniga, Elizabeth Brown, Emmanuel O Elijah, Jonathan L Klassen, Louis Felix Nothias, Julia M Gauglitz, Sara P Puckett, Shabnam Shalapour, Andres Mauricio Caraballo Rodriguez, Austin D Swafford, Kelly Weldon, Rohit Loomba, Robby Quinn, Nicole Sikora, Madeleine Ernst, Rob Knight, Francesca Di Ottavio, Bandeira Nuno, Christine M Aceves, Alan K Jar, Alexander A Aksenov, Ricardo da Silva, Alexey V Melnik, Amina Bouslimani, Marcy J Balunas, Pieter C Dorrestein
Research Type: Journal Article

Evaluating DESS as a storage medium for microbial ecology studies
2019
Madison Adams, Jonathan L Klassen, Kevin Lee
Research Type: Journal Article

Biogeography and Microscale Diversity Shape the Biosynthetic Potential of Fungus-growing Ant-associated Pseudonocardia
2019
Marc G Chevrette, Cameron R Currie, Nicole M Gerardo, Jon Clardy, Michael Poulsen, Bradon R McDonald, Garret Suen, Evelyn Wendt-Pienkowski, Geroge M Weinstock, Ethan B Van Arnam, Eric J Caldera, Matias J Cafaro, Heidi A Horne, Antonio c Ruzzini, Jonathan L Klassen
Research Type: Journal Article

Cycloheximide-producing Streptomyces associated with Xyleborinus saxesii and Xyleborinus affinis fungus-farming ambrosia beetles
2019
Jon Clardy, Peter H W Biedermann, Cameron R Currie, Frank Surup, Bradon McDonald, Jonathan L Klassen, Kirk J Grubbs
Research Type: Journal Article

https://www.biorxiv.org/content/early/2019/01/07/511493
Evaluating the assembly of diverse bacterial genomes using MinION long-read sequencing
2019
Lidia Beka, Sarah Goldstein, Jonathan L Klassen, Joerg Graf
Research Type: Journal Article

Ecology Helps Bound Causal Explanations in Microbiology
2019
Jonathan L Klassen
Research Type: Journal Article

The antimicrobial potential of Streptomyces from insect microbiomes
2019
Chris Thomas, Weilan GP Melo, Heidi A Horn, Jonathan L Klassen, William Flanigan, Gene E Ananiev, Adrian A Pinto-Tomas, Fan Zhang, Tim S Bugni, F Michael Hoffman, Gina R Lewin, Caitlin M Carlson, Adam J Book, Amber Schmitz, Kirk J Grubbs, Evelyn Wendt-Penkowski, Miao Zhao, David R Andes, Monica T Pupo, Camila Carlos, Kenneth J Barns, Scott Wildman, Laura Muller, Bradon R McDonald, Cameron R Currie, Jennifer J Knack, Marc G Chevrette, Humberto E Ortega, Julian Cagnazzo
Research Type: Journal Article

Keeping it fresh
2019
Jonathan L Klassen
Research Type: Journal Article

Broadening Participation in Scientific Conferences during the Era of Social Distancing.
2020
L L Kinkel, M J Michalska-Smith, M L Bolton, M D Millican, Kathryn Milligan-Myhre, Jonathan L Klassen, B E Wolfe, J P Dundore-Arias, A Shade, M R Fulcher, J Handelsman
Research Type: Journal Article

Mass spectrometry searches using MASST.
2020
F Di Ottavio, S P Puckett, P C Dorrestein, E Brown, M Wang, R Loomba, A K Jarmusch, M Panitchpakdi, F Vargas, J D Watrous, A M Caraballo-Rodríguez, L Labarta-Bajo, K E Kyle, E O Elijah, C M Aceves, S Shalapour, A Bouslimani, E I Zúñiga, N Bandeira, Jonathan L Klassen, R Knight, M Ernst, C S Carpenter, E C Gentry, J M Gauglitz, D Petras, N Sikora, A A Aksenov, Marcy J Balunas, K Weldon, A D Swafford, L F Nothias, A V Melnik, R da Silva, R Quinn
Research Type: Journal Article

Editorial overview: Hidden players: microbes reshape the insect niche.
2020
Stephen T Trumbo, Jonathan L Klassen
Research Type: Journal Article

Antimicrobial peptides and metal ions: novel therapeutic opportunities
Jasmin Portelinha, Searle Duay, Jonathan L Klassen, Alfredo Angeles-Boza
Research Type: Journal Article

Draft genome sequence of Spiroplasma platyhelix ATCC 51748, isolated from a dragonfly
Emily A Green, Jonathan L Klassen
Research Type: Journal Article

Subgroups in the Ralstonia solanacearum species complex use divergent 3 respiratory strategies to grow in tomato xylem
Jonathan L Klassen, Robert Anex, Bradon McDonald, Tiffany Lowe-Power, Beth L Dalsing, Caitilyn Allen, Alicia N Truchon, Devanshi Khokhani, Florent Ailloud, Philippe Prior, Cameron Currie, April MacIntyre, Enid T Gonzalez-Ortaz
Research Type: Journal Article