Mukul S. Bansal
Associate Professor/Computing

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Scholarly Contributions

76 Scholarly Contributions

37
Journal Articles
25
Conference Proceedings
12
Poster/Presentations
1
Book Chapter
1
Book
Efficient Distance-Based Reconstruction of Large-Scale Single-Cell Phylogenies from Copy Number Data
2022
Samson Weiner, Mukul Bansal
Research Type: Poster/Presentation

Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss
2012
Manolis Kellis, Mukul Bansal, Eric J Alm
Research Type: Journal Article

Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
2010
Oliver Eulenstein, Mukul Bansal, J Gordon Burleigh
Research Type: Journal Article

Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees
Misagh Kordi, Mukul Bansal
Research Type: Conference Proceedings

Generalized binary tanglegrams: Algorithms and applications
Oliver Eulenstein, Wen-Chieh Chang, Mukul Bansal, David Fernández-Baca
Research Type: Conference Proceedings

Generalizing the Domain-Gene-Species Reconciliation Framework to Microbial Genes and Domains
2023
Mukul Bansal, Abhijit Mondal
Research Type: Journal Article

Genome-scale phylogenetics through gene treeparsimony
2019
Mukul Bansal
Research Type: Poster/Presentation

Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees
2011
J Gordon Burleigh, André Wehe, Oliver Eulenstein, Stefanie Hartmann, Todd J Vision, Mukul Bansal
Research Type: Journal Article

Heuristics for the gene-duplication problem: a Theta(n) speed-up for the local search
Oliver Eulenstein, J Gordon Burleigh, Mukul Bansal, André Wehe
Research Type: Conference Proceedings

Improved Duplication-Transfer-Loss Reconciliation with Extinct and Unsampled Lineages
2021
Samson Weiner, Mukul S Bansal
Research Type: Journal Article

Improved gene tree error correction in the presence of horizontal gene transfer
2014
Yi-Chieh Wu, Eric Alm, Mukul Bansal, Manolis Kellis
Research Type: Journal Article

Inferring species trees from gene duplication episodes
Oliver Eulenstein, J Gordon Burleigh, Mukul Bansal, Todd J Vision
Research Type: Conference Proceedings

Inferring the International COVID-19 Transmission Network using TNet
2020
S Dhar, Ion I Mandoiu, Mukul Bansal
Research Type: Poster/Presentation

Integrative analysis of 111 reference human epigenomes.
2015
D Haussler, W Meuleman, M J Ziller, A R Pfenning, D Leung, G Elliott, A E Beaudet, M A Marra, R A Waterland, M Q Zhang, J F Costello, R S Sandstrom, E Gjoneska, S J Jones, R Moore, R A Harris, T D Tlsty, J W Whitaker, T Wang, Bi Zhang, N A Sinnott-Armstrong, J R Dixon, S Feizi, A R Kim, D Li, J A Thomson, X Wang, R S Hansen, W Xie, J Ernst, N Rajagopal, M Stevens, R Lister, T R Mercer, R Lowdon, L H Tsai, P J Farnham, C Hong, G Quon, A Milosavljevic, W Li, A Tam, A Meissner, R D Hawkins, V Amin, P J Sabo, M Hirst, P L De Jager, S J Neph, A Heravi-Moussavi, J A Stamatoyannopoulos, A Carles, M Bilenky, M T McManus, A Sarkar, K H Farh, L H Chadwick, S Sunyaev, S J Fisher, Mukul Bansal, L D Ward, R E Thurman, M Claussnitzer, Y Liu, A J Mungall, E Chuah, R C Sallari, T K Canfield, V Onuchic, M Kellis, Z Zhang, W Wang, M D Schultz, J Wu, C Coarfa, A Kundaje, A Yen, P Kheradpour, J Wang, C B Epstein, P Gascard, R Karlic, A Kulkarni, P Ray, X Zhou, L A Boyer, B E Bernstein, J R Ecker, B Ren, K T Siebenthall, P Polak, R Kaul, N Shoresh, Y C Wu, M L Eaton
Research Type: Journal Article

Linear-Time Algorithms for Phylogenetic Tree Completion Under Robinson-Foulds Distance
2020
Mukul Bansal
Research Type: Journal Article

Linear-Time Algorithms for some Phylogenetic Tree Completion Problems Under Robinson-Foulds Distance
2024
Mukul Bansal
Research Type: Conference Proceedings

Locating large-scale gene duplication events through reconciled trees: implications for identifying ancient polyploidy events in plants
2009
Mukul Bansal, John Gordon Burleigh, André Wehe, Oliver Eulenstein
Research Type: Journal Article

Locating multiple gene duplications through reconciled trees
J Gordon Burleigh, Mukul Bansal, Oliver Eulenstein, Andre Wehe
Research Type: Conference Proceedings

Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees
2014
Matthew D Rasmussen, Yi-Chieh Wu, Manolis Kellis, Mukul Bansal
Research Type: Journal Article

On Inferring Additive and Replacing Horizontal Gene Transfers Through Phylogenetic Reconciliation
2024
Misagh Kordi, Mukul Bansal, Soumya Kundu
Research Type: Conference Proceedings