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Computational Advances in Bio and Medical Sciences: 11th International Conference, ICCABS 2021, Virtual Event, December 16–18, 2021, Revised Selected Papers

2022

Pavel Skums, Alexander Zelikovsky, Mukul Bansal, Marmar Moussa, Ion I Mandoiu, Murray Patterson, Sanguthevar Rajasekaran

Research Type: Book

Comparing and aggregating partially resolved trees

David Fernández-Baca, Jianrong Dong, Mukul Bansal

Research Type: Conference Proceedings

CNAsim: improved simulation of single-cell copy number profiles and DNA-seq data from tumors

2023

Samson Weiner, Mukul Bansal

Research Type: Journal Article

Automated Inference of Horizontal Gene Transfers for Phylogenetic Dating

2019

Mukul Bansal

Research Type: Poster/Presentation

Assessing the accuracy of phylogenetic rooting methods on prokaryotic gene families

2020

Gregory Fournier, L. Thiberio Rangel, Mukul Bansal, Soumya Kundu, Taylor Wade

Research Type: Journal Article

Assessing the Potential of Gene Tree Parsimony for Microbial Phylogenomics

Mukul Bansal, Yutian Feng, Samson Weiner, Peter J Gogarten

Research Type: Conference Proceedings

An Omega(n^2/log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem

2008

Oliver Eulenstein, Mukul Bansal

Research Type: Journal Article

An Omega(n^2/log n) Speed-Up of Heuristics for the Gene-Duplication Problem

Oliver Eulenstein, Mukul Bansal

Research Type: Conference Proceedings

An Integrated Reconciliation Framework for Domain, Gene, and Species Level Evolution: Algorithms and Applications

2018

Lei Li, Mukul Bansal

Research Type: Journal Article

An Integer Linear Programming Solution for the Domain-Gene-Species Reconciliation Problem

2024

Lei Li, Mukul Bansal

Research Type: Conference Proceedings

Algorithms for Genome-Scale Phylogenetics Using Gene Tree Parsimony

2013

Mukul Bansal, Oliver Eulenstein

Research Type: Journal Article

A note on the fixed parameter tractability of the gene-duplication problem

2011

Mukul Bansal, Ron Shamir

Research Type: Journal Article

A comparative encyclopedia of DNA elements in the mouse genome.

2014

A Skoultchi, C Notredame, W J Kent, J Lian, P Flicek, D T Erickson, Y Lin, A Kundaje, Mukul Bansal, Y C Wu, M Fastuca, I Antoshechkin, D M Gilbert, K Lee, D Bates, A Shafer, T R Gingeras, J A Stamatoyannopoulos, D Dunn, M J Pazin, S Josefowicz, T Kawli, R Sandstrom, Y Wang, M J Weiss, R S Harris, X Cao, R F Lowdon, T Mishra, L Pham, A Tanzer, Z Ma, Z Ye, D Levasseur, S H Orkin, E E Eichler, A P Reynolds, X Q Zhou, P J Sabo, M Diegel, E A Feingold, R E Thurman, F Neri, A Kirilusha, L H See, C Zaleski, M Zhang, S Zhong, M Kellis, C S Morrissey, D Jain, N Dogan, C Jansen, K R Rosenbloom, T Kahveci, A Johnson, C Disteche, M Ramalho Santos, L Selleri, T Kutyavin, M Pignatelli, V S Malladi, A Rudensky, G Euskirchen, J Vierstra, W Wu, R C Hardison, M D Rasmussen, S Kuan, H Amrhein, E Rynes, C Davis, D D Pervouchine, E Giste, R Byron, J Herrero, C A Sloan, A P Boyle, P Cayting, L Edsall, M A Bender, J Lagarde, P Prieto, B A Williams, Y Cheng, M A Beer, R Guigo, P Treuting, R Samstein, E Haugen, T Canfield, R S Hansen, D Lee, M S Cline, M T Groudine, A Dobin, Y Shen, F Yue, S M Weissman, A Mortazavi, J Taylor, B Wold, L B Adams, S Gosh, M S Wilken, A Breschi, K Beal, B de Lacerda Sousa, K Learned, V M Kirkup, D McCleary, K Li, O Denas, G Bussotti, J Drenkow, G DeSalvo, K Fisher-Aylor, D Trout, R Kaul, R Humbert, B D Pope, T Papayannopoulou, T Wang, P J Good, B Ren, S Djebali, T A Reh, S Neph, M De Bruijn, K H Chang, G A Blobel, M P Snyder, T Ryba, G K Marinov, S Vong, S Lin, C A Keller

Research Type: Journal Article

A Supervised Machine Learning Approach for Distinguishing Between Additive and Replacing Horizontal Gene Transfers

2024

Misagh Kordi, Abhijit Mondal, Mukul Bansal

Research Type: Conference Proceedings