Mukul S. Bansal
Associate Professor/Computing

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Scholarly Contributions

76 Scholarly Contributions

37
Journal Articles
25
Conference Proceedings
12
Poster/Presentations
1
Book Chapter
1
Book
Improved gene tree error correction in the presence of horizontal gene transfer
2014
Yi-Chieh Wu, Eric Alm, Mukul Bansal, Manolis Kellis
Research Type: Journal Article

Integrative analysis of 111 reference human epigenomes.
2015
D Haussler, W Meuleman, M J Ziller, A R Pfenning, D Leung, G Elliott, A E Beaudet, M A Marra, R A Waterland, M Q Zhang, J F Costello, R S Sandstrom, E Gjoneska, S J Jones, R Moore, R A Harris, T D Tlsty, J W Whitaker, T Wang, Bi Zhang, N A Sinnott-Armstrong, J R Dixon, S Feizi, A R Kim, D Li, J A Thomson, X Wang, R S Hansen, W Xie, J Ernst, N Rajagopal, M Stevens, R Lister, T R Mercer, R Lowdon, L H Tsai, P J Farnham, C Hong, G Quon, A Milosavljevic, W Li, A Tam, A Meissner, R D Hawkins, V Amin, P J Sabo, M Hirst, P L De Jager, S J Neph, A Heravi-Moussavi, J A Stamatoyannopoulos, A Carles, M Bilenky, M T McManus, A Sarkar, K H Farh, L H Chadwick, S Sunyaev, S J Fisher, Mukul Bansal, L D Ward, R E Thurman, M Claussnitzer, Y Liu, A J Mungall, E Chuah, R C Sallari, T K Canfield, V Onuchic, M Kellis, Z Zhang, W Wang, M D Schultz, J Wu, C Coarfa, A Kundaje, A Yen, P Kheradpour, J Wang, C B Epstein, P Gascard, R Karlic, A Kulkarni, P Ray, X Zhou, L A Boyer, B E Bernstein, J R Ecker, B Ren, K T Siebenthall, P Polak, R Kaul, N Shoresh, Y C Wu, M L Eaton
Research Type: Journal Article

RecPhyloXML - a format for reconciled gene trees
2018
Guillaume Gence, David Posada, Celine Scornavacca, Adrián A Davín, Lars Arvestad, âric Tannier, Gergely Szöll≈ësi, Christophe Dessimoz, Vincent Berry, Mukul Bansal, Bastien Boussau, Nicolas Comte, Wandrille Duchemin, Anne-Muriel Arigon Chifolleau, Vincent Daubin, Diego Mallo, Fran√ßois Chevenet, Louxin Zhang, Damir Hasic, David Dylus, Rémi Planel
Research Type: Journal Article

An Integrated Reconciliation Framework for Domain, Gene, and Species Level Evolution: Algorithms and Applications
2018
Lei Li, Mukul Bansal
Research Type: Journal Article

RANGER-DTL 2.0: Rigorous Reconstruction of Gene-Family Evolution by Duplication, Transfer, and Loss
2018
Misagh Kordi, Mukul Bansal, Soumya Kundu, Manolis Kellis
Research Type: Journal Article

TreeFix-VP: Phylogenetic Error-Correction for Viral Transmission Network Inference
2018
Mukul Bansal, C Zhang, Ion I Mandoiu, S Sledzieski
Research Type: Poster/Presentation

SaGePhy: An improved phylogenetic simulation framework for gene and subgene evolution
2019
Mukul Bansal, Soumya Kundu
Research Type: Journal Article

On the Accuracy of HGT Inference Using Phylogenetic Reconciliation
2019
Alex Masi, Farzaneh Rastegari, Mukul Bansal
Research Type: Poster/Presentation

Genome-scale phylogenetics through gene treeparsimony
2019
Mukul Bansal
Research Type: Poster/Presentation

Automated Inference of Horizontal Gene Transfers for Phylogenetic Dating
2019
Mukul Bansal
Research Type: Poster/Presentation

Systematic Analysis of Genome-Wide Horizontal Gene Transfer Patterns Reveals Extensive Multi-Gene Transfer in Prokaryotes
2019
Mukul Bansal
Research Type: Poster/Presentation

TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference
2019
C Zhang, Ion I Mandoiu, S Sledzieski, Mukul Bansal
Research Type: Poster/Presentation

Linear-Time Algorithms for Phylogenetic Tree Completion Under Robinson-Foulds Distance
2020
Mukul Bansal
Research Type: Journal Article

Assessing the accuracy of phylogenetic rooting methods on prokaryotic gene families
2020
Gregory Fournier, L. Thiberio Rangel, Mukul Bansal, Soumya Kundu, Taylor Wade
Research Type: Journal Article

Inferring the International COVID-19 Transmission Network using TNet
2020
S Dhar, Ion I Mandoiu, Mukul Bansal
Research Type: Poster/Presentation

Systematic Detection of Large-Scale Multigene Horizontal Transfer in Prokaryotes
2021
Matthew Fullmer, Mukul S Bansal, Joerg Graf, Peter J Gogarten, Sean Gosselin, Lina Kloub
Research Type: Journal Article

Improved Duplication-Transfer-Loss Reconciliation with Extinct and Unsampled Lineages
2021
Samson Weiner, Mukul S Bansal
Research Type: Journal Article

Understanding Horizontal Gene Transfer: Units of Transfer and Modes of Integration
2021
Mukul Bansal
Research Type: Poster/Presentation

SaGePhy: an improved phylogenetic simulation framework for gene and subgene evolution
2021
Soumya Kundu, Mukul Bansal
Research Type: Poster/Presentation

Computational Advances in Bio and Medical Sciences: 11th International Conference, ICCABS 2021, Virtual Event, December 16–18, 2021, Revised Selected Papers
2022
Pavel Skums, Alexander Zelikovsky, Mukul Bansal, Marmar Moussa, Ion I Mandoiu, Murray Patterson, Sanguthevar Rajasekaran
Research Type: Book