Mukul S. Bansal
Associate Professor/Computing

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Scholarly Contributions

76 Scholarly Contributions

37
Journal Articles
25
Conference Proceedings
12
Poster/Presentations
1
Book Chapter
1
Book
A comparative encyclopedia of DNA elements in the mouse genome.
2014
A Skoultchi, C Notredame, W J Kent, J Lian, P Flicek, D T Erickson, Y Lin, A Kundaje, Mukul Bansal, Y C Wu, M Fastuca, I Antoshechkin, D M Gilbert, K Lee, D Bates, A Shafer, T R Gingeras, J A Stamatoyannopoulos, D Dunn, M J Pazin, S Josefowicz, T Kawli, R Sandstrom, Y Wang, M J Weiss, R S Harris, X Cao, R F Lowdon, T Mishra, L Pham, A Tanzer, Z Ma, Z Ye, D Levasseur, S H Orkin, E E Eichler, A P Reynolds, X Q Zhou, P J Sabo, M Diegel, E A Feingold, R E Thurman, F Neri, A Kirilusha, L H See, C Zaleski, M Zhang, S Zhong, M Kellis, C S Morrissey, D Jain, N Dogan, C Jansen, K R Rosenbloom, T Kahveci, A Johnson, C Disteche, M Ramalho Santos, L Selleri, T Kutyavin, M Pignatelli, V S Malladi, A Rudensky, G Euskirchen, J Vierstra, W Wu, R C Hardison, M D Rasmussen, S Kuan, H Amrhein, E Rynes, C Davis, D D Pervouchine, E Giste, R Byron, J Herrero, C A Sloan, A P Boyle, P Cayting, L Edsall, M A Bender, J Lagarde, P Prieto, B A Williams, Y Cheng, M A Beer, R Guigo, P Treuting, R Samstein, E Haugen, T Canfield, R S Hansen, D Lee, M S Cline, M T Groudine, A Dobin, Y Shen, F Yue, S M Weissman, A Mortazavi, J Taylor, B Wold, L B Adams, S Gosh, M S Wilken, A Breschi, K Beal, B de Lacerda Sousa, K Learned, V M Kirkup, D McCleary, K Li, O Denas, G Bussotti, J Drenkow, G DeSalvo, K Fisher-Aylor, D Trout, R Kaul, R Humbert, B D Pope, T Papayannopoulou, T Wang, P J Good, B Ren, S Djebali, T A Reh, S Neph, M De Bruijn, K H Chang, G A Blobel, M P Snyder, T Ryba, G K Marinov, S Vong, S Lin, C A Keller
Research Type: Journal Article

Pareto-Optimal Phylogenetic Tree Reconciliation
2014
Ran Libeskind-hadas, Manolis Kellis, Mukul Bansal, Yi-Chieh Wu
Research Type: Journal Article

Improved gene tree error correction in the presence of horizontal gene transfer
2014
Yi-Chieh Wu, Eric Alm, Mukul Bansal, Manolis Kellis
Research Type: Journal Article

Systematic inference of highways of horizontal gene transfer in prokaryotes
2013
Ron Shamir, Timothy J Harlow, Mukul Bansal, Guy Banay, Peter J Gogarten
Research Type: Journal Article

Algorithms for Genome-Scale Phylogenetics Using Gene Tree Parsimony
2013
Mukul Bansal, Oliver Eulenstein
Research Type: Journal Article

Treefix: Statistically informed gene tree error correction using species trees
2013
Matthew D Rasmussen, Mukul Bansal, Manolis Kellis, Yi-Chieh Wu
Research Type: Journal Article

Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss
2012
Manolis Kellis, Mukul Bansal, Eric J Alm
Research Type: Journal Article

Detecting highways of horizontal gene transfer
2011
Mukul Bansal, Peter J Gogarten, Guy Banay, Ron Shamir
Research Type: Journal Article

Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees
2011
J Gordon Burleigh, André Wehe, Oliver Eulenstein, Stefanie Hartmann, Todd J Vision, Mukul Bansal
Research Type: Journal Article

A note on the fixed parameter tractability of the gene-duplication problem
2011
Mukul Bansal, Ron Shamir
Research Type: Journal Article

Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
2010
Oliver Eulenstein, Mukul Bansal, J Gordon Burleigh
Research Type: Journal Article

Robinson-Foulds supertrees
2010
Mukul Bansal, David Fernández-Baca, Oliver Eulenstein, J Gordon Burleigh
Research Type: Journal Article

iGTP: A software package for large-scale gene tree parsimony analysis
2010
Mukul Bansal, Oliver Eulenstein, André Wehe, Ruchi Chaudhary, David Fernández-Baca
Research Type: Journal Article

Locating large-scale gene duplication events through reconciled trees: implications for identifying ancient polyploidy events in plants
2009
Mukul Bansal, John Gordon Burleigh, André Wehe, Oliver Eulenstein
Research Type: Journal Article

Computing distances between partial rankings
2009
David Fernández-Baca, Mukul Bansal
Research Type: Journal Article

The gene-duplication problem: Near-linear time algorithms for NNI-based local searches
2009
Mukul Bansal, Oliver Eulenstein, André Wehe
Research Type: Journal Article

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony
2008
Oliver Eulenstein, Mukul Bansal, André Wehe, J Gordon Burleigh
Research Type: Journal Article

PhyloFinder: an intelligent search engine for phylogenetic tree databases
2008
David Fernández-Baca, J Gordon Burleigh, Mukul Bansal, Duhong Chen
Research Type: Journal Article

The multiple gene duplication problem revisited
2008
Mukul Bansal, Oliver Eulenstein
Research Type: Journal Article

An Omega(n^2/log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem
2008
Oliver Eulenstein, Mukul Bansal
Research Type: Journal Article