Rachel J. O'neill
Director & Distinguished Professor/Systems Genomics Institute

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Scholarly Contributions

93 Scholarly Contributions

52
Journal Articles
36
Poster/Presentations
2
Other Scholarly Works
2
Conference Proceedings
1
Book Chapter
RNA-dependent stabilization of SUV39H1 at constitutive heterochromatin.
2017
A F Straight, W L Johnson, W T Yewdell, Z Duda, Rachel J O'Neill, S M McNulty, John Bell, B A Sullivan
Research Type: Journal Article

Centromere Transcription: means and motive
2017
Zachary Duda, Trusiak Sarah, Rachel J O'Neill
Research Type: Journal Article

The repetitive DNA element BncDNA, enriched in the B chromosome of the cichlid fish Astatotilapia latifasciata, transcribes a potentially noncoding RNA.
2016
B E Fantinatti, D C Cabral-de-Mello, D F Marques, R A Oliveira, รข Ramos, Judith D Brown, A L Cardoso, Rachel J O'Neill, C Martins
Research Type: Journal Article

Rapid evolutionary rates and unique genomic signatures discovered in the first reference genome for the Southern Ocean salp, Salpa thompsoni (Urochordata, Thaliacea)
2016
Rachel J O'Neill, Ann Bucklin, Michael J O'Neill, Paola Batta-Lona, Sarah Trusiak, Nathan Jue, Craig Obergfell
Research Type: Journal Article

Habitat fragmentation and genetic diversity in natural populations of the Bornean elephant: implications for conservation
2016
Marc Ancrenaz, Celia Kun-Rodrigue, Lounes Chikhi, Nurzhafarina Othman, Reeta Sharma, Benoit Gossens, Nate Jue, Rosdi Sakong, Laurentius Ambu, Michael Bruford, Rachel J O'Neill
Research Type: Journal Article

Four core genotypes mouse model: localization of the Sry transgene and bioassay for testicular hormone levels
2015
Ryan Mackie, Judith D Brown, Arthur P Arnold, Shelly Domadia, Yuichiro Itoh, Kathy Kampf, Rachel J O'Neill
Research Type: Journal Article

Establishment of Centromeric Chromatin by the CENP-A Assembly Factor CAL1 Requires FACT-Mediated Transcription.
2015
M R Przewloka, Chi-ming Chen, Rachel J O'Neill, J Palladino, D M Glover, L Rosin, Barbara Mellone, E Bettini, S Trusiak, S Bowers, Z Lipinszki
Research Type: Journal Article

Maternal Methyl Supplemented Diets and Effects on Offspring Health.
2015
P Vrana, C S Rosenfeld, Rachel J O'Neill
Research Type: Journal Article

Identification of a recently active mammalian SINE derived from ribosomal RNA.
2015
Michael J O'Neill, Mark Longo, Judith D Brown, Chu Zhang, Rachel J O'Neill
Research Type: Journal Article

Transcriptional profiles of bovine in vivo pre-implantation development.
2014
Z Jiang, Y Ruan, H Dong, Xiuchun Tian, Jinbo Bi, Craig J Obergfell, X Zheng, Yong Tang, Jianjun Sun, O Luo, J Chen, Rachel J O'Neill
Research Type: Journal Article

Genomics: Something to swing about.
2014
Rachel J O'Neill, Michael J O'Neill
Research Type: Journal Article

Transcriptome resources for the white-footed deermouse (Peromyscus leucopus): new genomic tools for investigating ecologically divergent urban and rural populations.
2014
Rachel J O'Neill, S E Harris, J Munshi-South
Research Type: Journal Article

A genetic map of Peromyscus with chromosomal assignment of linkage groups (a Peromyscus genetic map)
2014
Quang Nguyen, Judith D Brown, Jane Kenney-Hunt, Clifton M. Ramsdell, Kimberly R. Shorter, Tony Phan, Gabor Szalai, Julie L Glenn, Rachel J O'Neill, Adrienne Lewandowski, Travis Glenn, Olga V. Tsyusko, Michael J. Dewey, Michael R. Felder, Paul B. Vrana
Research Type: Journal Article

The Evolution of Centromeric DNA Sequences
2014
Judith D Brown, Rachel J O'Neill
Research Type: Journal Article

Esperanto for histones: CENP-A, not CenH3, is the centromeric histone H3 variant
2013
Barbara Mellone, Rachel J O'Neill
Research Type: Journal Article

Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach
2013
Mohammed S Qureshi, Michael J O'Neill, Seth Kasowitz, Craig Obergfell, Sahar Elsisi, Rachel J O'Neill, Robert Foley, Michael Murphy, Nate Jue
Research Type: Journal Article

Signatures of Rapid Evolution in Urban and Rural Transcriptomes of White-Footed Mice (Peromyscus leucopus) in the New York Metropolitan Area
2013
S E Harris, C Obergfell, Rachel J O'Neill, J Munshi-South
Research Type: Journal Article

Two different high throughput sequencing approaches identify thousands of de novo genomic markers for a non-model species, the Bornean elephant (Elephas maximus borneensis)
2012
Nathaniel Jue, Craig Obergfell, Rachel J O'Neill
Research Type: Journal Article

Unique small RNA signatures uncovered in the tammar wallaby genome
2012
Sarah Mitchell, Sohaib Qureshi, Rachel J O'Neill, Michael J O'Neill, Nicholas Jannetty, Andrew J Pask, Dawn Carone, Laura Hall, James Lindsay, Judith D Brown
Research Type: Journal Article

Evolution of coding and non-coding genes in HOX clusters of a marsupial
2012
Rachel J O'Neill, Dawn Carone, James Lindsay, Andrew J Pask
Research Type: Journal Article