Yufeng Wu
Professor/Computing

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Scholarly Contributions

87 Scholarly Contributions

42
Journal Articles
32
Poster/Presentations
8
Conference Proceedings
3
Other Scholarly Works
2
Books
scSNVIndel. accurate and efficient calling of SNVs and indels from single cell sequencing using integrated Bi-LSTM
2024
Yufeng Wu, Jingyang Gao, Lei Cai
Research Type: Conference Proceedings

Utilizing predictions of early prostate-specific antigen failure to optimize patient selection for adjuvant systemic therapy trials.
2000
A A Renshaw, J P Richie, Ming-Hui Chen, M Hurwitz, P W Kantoff, A V D'Amico, A Wein, S B Malkowicz, J E Tomaszewski, R Whittington, Yufeng Wu
Research Type: Journal Article

SpliceJumper: a classification-based approach for calling splicing junctions from RNA-seq data
2015
Chong Chu, Xin Li, Yufeng Wu
Research Type: Journal Article

ScisTree2: An Improved Method for??Large-Scale Inference of??Cell Lineage Trees and??Genotype Calling from??Noisy Single Cell Data
2025
Haotian Zhang, Teng Gao, Yufeng Wu, Yiming Zhang
Research Type: Conference Proceedings

ScisTree2: Accurate Cell Lineage Tree Inference for Tens of Thousands of Cells from Noisy Single Cell Data
2024
Haotian Zhang, Yiming Zhang, Yufeng Wu, Teng Gao
Research Type: Poster/Presentation

SVseq: an approach for detecting exact breakpoints of deletions with low-coverage sequence data
2012
Jin Zhang, Yufeng Wu
Research Type: Journal Article

STELLS2: fast and accurate coalescent-based maximum likelihood inference of species trees from gene tree topologies
2017
Jingwen Pei, Yufeng Wu
Research Type: Journal Article

REPdenovo: a software tool for repeat analysis from sequence reads
2016
Chong Chu, Yufeng Wu
Research Type: Other Scholarly Work

REPdenovo: Inferring De Novo Repeat Motifs from Short Sequence Reads
2016
Chong Chu, Rasmus Nielsen, Yufeng Wu
Research Type: Journal Article

RENT+: An Improved Method for Inferring Local Genealogical Trees from Haplotypes with Recombination
2017
Sajad Mirzaei, Yufeng Wu
Research Type: Poster/Presentation

RENT+: A New Method for Inferring Local Genealogical Tree Topologies from Haplotypes with the Presence of Recombination
2017
Sajad Mirzaei, Yufeng Wu
Research Type: Journal Article

Probability Computation for Trees and Networks Under Coalescent Theory
2022
Yufeng Wu
Research Type: Poster/Presentation

Probability Computation Based On Coalescent Theory For Evolutionary Genomics Problems
2012
Yufeng Wu
Research Type: Poster/Presentation

Perineural invasion as a predictor of biochemical outcome following radical prostatectomy for select men with clinically localized prostate cancer.
2001
Ming-Hui Chen, J P Richie, M Nash, A V D'Amico, A A Renshaw, Yufeng Wu
Research Type: Journal Article

Pathologic findings and prostate specific antigen outcome after radical prostatectomy for patients diagnosed on the basis of a single microscopic focus of prostate carcinoma with a gleason score
2000
Ming-Hui Chen, Yufeng Wu, A V D'Amico, M Nash, A A Renshaw, J P Richie
Research Type: Journal Article

PIRNs: a software tool for building hybridization networks
2014
Yufeng Wu
Research Type: Other Scholarly Work

Meta-analysis identifies common gut microbiota associated with multiple sclerosis
2024
Qingqi Lin, Kun Chen, Ali Mirza, Laura Piccio, David A. Hafler, Erin E. Longbrake, Howard L. Weiner, Laura M. Cox, Helen Tremlett, Yufeng Wu, Takashi Yamamura, Yanjiao Zhou, Siobhan Ni Choileain, Yair Dorsett
Research Type: Journal Article

https://doi.org/10.1186/s13073-024-01364-x
Linkage Disequilibrium Based Genotype Calling from Low-Coverage Shotgun Sequencing Reads
2011
J. Duitama, Ion I Mandoiu, Y. Hernandez, Justin L Kennedy, Yufeng Wu, S. Dinakar
Research Type: Journal Article

Joint Inference of Ancestry and Genotypes of Parents from a Small Number of Children
2022
Yiming Zhang, Yufeng Wu
Research Type: Journal Article

InvBFM: Finding Genomic Inversions from High-throughput Sequence Data based on Feature Mining
2020
Yufeng Wu, Jingyang Gao, Zhongjia Wu
Research Type: Journal Article