Yufeng Wu
Professor/Computing

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Scholarly Contributions

87 Scholarly Contributions

42
Journal Articles
32
Poster/Presentations
8
Conference Proceedings
3
Other Scholarly Works
2
Books
Computational Problems in Genetics
2016
Yufeng Wu
Research Type: Poster/Presentation

Algorithms for Likelihood Computation on Coalescent Theory in Population Genetics
2016
Yufeng Wu
Research Type: Poster/Presentation

In-Situ Formation of Holmium Oxide in Pores of Mesoporous Carbon Nanoparticles as Substrates for Neutron-Activatable Radiotherapeutics.
2017
J Kim, M Jay, Yufeng Wu, Z X Luo, Xiuling Lu
Research Type: Journal Article

STELLS2: fast and accurate coalescent-based maximum likelihood inference of species trees from gene tree topologies
2017
Jingwen Pei, Yufeng Wu
Research Type: Journal Article

RENT+: A New Method for Inferring Local Genealogical Tree Topologies from Haplotypes with the Presence of Recombination
2017
Sajad Mirzaei, Yufeng Wu
Research Type: Journal Article

Concod: an effective integration framework of consensus-based calling deletions from next-generation sequencing data
2017
Lei Cai, Chong Chu, Jingyang Gao, Yufeng Wu, Xiaodong Zhang
Research Type: Journal Article

RENT+: An Improved Method for Inferring Local Genealogical Trees from Haplotypes with Recombination
2017
Sajad Mirzaei, Yufeng Wu
Research Type: Poster/Presentation

CircMarker: A Fast and Accurate Algorithm for Circular RNA Detection
2017
Yufeng Wu, Jingwen Pei, Xin Li, Ion I Mandoiu, Chong Chu
Research Type: Poster/Presentation

An improved approach for reconstructing consensus repeats from short sequence reads
2017
Jingwen Pei, Chong Chu, Yufeng Wu
Research Type: Poster/Presentation

GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
2017
Chong Chu, Xin Li, Yufeng Wu
Research Type: Poster/Presentation

CLADES: A classification‐based machine learning method for species delimitation from population genetic data
2018
Xin Li, Jingwen Pei, Chong Chu, Yufeng Wu, Bin Lu
Research Type: Journal Article

An Improved Approach for Reconstructing Consensus Repeats from Short Sequence Reads
2018
Yufeng Wu, Jingwen Pei, Chong Chu
Research Type: Journal Article

Genomic Takeover by Transposable Elements in the Strawberry Poison Frog
2018
Guojie Zhang, Kyle Summers, Xu Xun, Corinne L Richards-Zawacki, Chunxue Guo, Zijun Xiong, Yufeng Wu, Matthew D MacManes, Ammon Corl, Chong Chu, Layla Freeborn, Huanming Yang, Marcus R Kronforst, Jiao Zheng, Roberto Márquez, Long Zhou, Tyler Linderoth, Rebekah L Rogers, Rasmus Nielsen
Research Type: Journal Article

CircMarker: A Fast and Accurate Algorithm for Circular RNA Detection
2018
Chong Chu, Ion I Mandoiu, Xin Li, Jingwen Pei, Yufeng Wu
Research Type: Journal Article

CLADES: a classification‐based machine learning method for species delimitation from population genetic data
2018
Yufeng Wu
Research Type: Poster/Presentation

DeepSV: Accurate calling of genomic deletions from high-throughput sequencing data using deep convolutional neural network
2019
Yufeng Wu, Lei Cai, Jingyang Gao
Research Type: Journal Article

GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads
2019
Yufeng Wu, Chong Chu, Xin Li
Research Type: Journal Article

Accurate and efficient cell lineage tree inference from noisy single cell data: the maximum likelihood perfect phylogeny approach
2019
Yufeng Wu
Research Type: Poster/Presentation

A draft genome sequence of the elusive giant squid, Architeuthis dux
2020
Simon Rasmussen, Fernando Peñaloza, L Filipe C Castro, Filipe Silva, Inger Winkelmann, Blagoy Blagoev, Thomas Sicheritz-Ponten, Tomas Vinar, Erich Jarvis, Hugo Osório, M Thomas P Gilbert, Alvarina Couto, Inigo Barrio-Hernandez, Jan M Strugnell, Mateus Patricio, Paul Gardner, Rasmus Nielsen, Qiye Li, Oleg Simakov, Tobias Baril, Yufeng Wu, Barbara Fraz√£o, Carolin B Albertin, Ricardo Tafur-Jimenez, Bent Petersen, Graham C Alexander, Jr, Agostinho Antunes, √Çngela M Ribeiro, Andre M Machado, Henk-Jan Hoving, Bin Ma, Davide Pisani, Sara Rocha, M Ziaur Rahman, Olivier Fedrigo, Brona Brejova, Yufeng Wu, Jakob Vinther, Francesco Musacchia, Alexandre Campos, Rute R da¬†Fonseca, Remo Sanges, Guojie Zhang, Alex Hayward
Research Type: Journal Article

Inference of Population Admixture Network from Local Gene Genealogies: a Coalescent-based Maximum Likelihood Approach
2020
Yufeng Wu
Research Type: Journal Article