Yufeng Wu
Professor/Computing

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Scholarly Contributions

87 Scholarly Contributions

42
Journal Articles
32
Poster/Presentations
8
Conference Proceedings
3
Other Scholarly Works
2
Books
ScisTree2: An Improved Method for??Large-Scale Inference of??Cell Lineage Trees and??Genotype Calling from??Noisy Single Cell Data
2025
Haotian Zhang, Teng Gao, Yufeng Wu, Yiming Zhang
Research Type: Conference Proceedings

Bounding the number of reticulation events for displaying multiple trees in a phylogenetic network
2025
Yufeng Wu, Louxin Zhang
Research Type: Journal Article

A Synchronization Detection Approach for Identifying Rare Mutations underlying Common Disease
2024
Yanqin Liu, Jiayin Wang, Jin Zhang, Xuanping Zhang, Yufeng Wu
Research Type: Conference Proceedings

scSNVIndel. accurate and efficient calling of SNVs and indels from single cell sequencing using integrated Bi-LSTM
2024
Yufeng Wu, Jingyang Gao, Lei Cai
Research Type: Conference Proceedings

Concod: Accurate consensus-based approach of calling deletions from high-throughput sequencing data
2024
Xiaodong Zhang, Yao Zhang, Jingyang Gao, Yufeng Wu, Chong Chu
Research Type: Conference Proceedings

A general approach for inferring the ancestry of ancestors of an admixed individual
2024
Haotian Zhang, Yiming Zhang, Yufeng Wu
Research Type: Journal Article

Computing the Bounds of the Number of Reticulations in a Tree-Child Network That Displays a Set of Trees
2024
Yufeng Wu, Louxin Zhan
Research Type: Journal Article

Meta-analysis identifies common gut microbiota associated with multiple sclerosis
2024
Qingqi Lin, Kun Chen, Ali Mirza, Laura Piccio, David A. Hafler, Erin E. Longbrake, Howard L. Weiner, Laura M. Cox, Helen Tremlett, Yufeng Wu, Takashi Yamamura, Yanjiao Zhou, Siobhan Ni Choileain, Yair Dorsett
Research Type: Journal Article

https://doi.org/10.1186/s13073-024-01364-x
A general approach for inferring the ancestry of recent ancestors of an admixed individual
2024
Yufeng Wu, Haotian Zhang, Yiming Zhang
Research Type: Poster/Presentation

ScisTree2: Accurate Cell Lineage Tree Inference for Tens of Thousands of Cells from Noisy Single Cell Data
2024
Haotian Zhang, Yiming Zhang, Yufeng Wu, Teng Gao
Research Type: Poster/Presentation

Detecting genomic deletions from high-throughput sequence data with unsupervised learning
2023
Yufeng Wu, Xin Li
Research Type: Journal Article

Algorithms for Inferring the Ancestry of an Admixed Individual
2023
Yufeng Wu
Research Type: Poster/Presentation

Alterations of host-gut microbiome interactions in multiple sclerosis
2022
Hang Xiao, Li Deng, Zhongmao Liu, Claudia Cantoni, Kun Chen, Amber Salter, Amy Lovett-Racke, Pamela Newland, Anne H Cross, Kathleen Obert, Alberto Locca, Cassandra Suther, Suresh Bokoliya, Matthew Gormley, Laura Piccio, Laura Ghezzi, Phillip I Tarr, Qingqi Lin, Yanhui Han, Yue Liu, Yeming Pan, Emily Evans, Zhengze Li, Yair Dorsett, Hunter Panier, Robert Mikesell, Yanjiao Zhou, Yufeng Wu
Research Type: Journal Article

Joint Inference of Ancestry and Genotypes of Parents from a Small Number of Children
2022
Yiming Zhang, Yufeng Wu
Research Type: Journal Article

Cardiometabolic Biomarkers and Habitual Caffeine Consumption Associate with the Adverse Ambulatory Blood Pressure Response to Strenuous Physical Exertion among Firefighters.
2022
A B Fernandez, Ming-Hui Chen, Yufeng Wu, A L Zaleski, Beth A Taylor, P M Parducci, Yi Zhang, K M Gans, Linda S Pescatello, R S Berkowsky
Research Type: Journal Article

Can a set of trees be displayed in a tree-child network simultaneously?
2022
Yufeng Wu
Research Type: Poster/Presentation

Probability Computation for Trees and Networks Under Coalescent Theory
2022
Yufeng Wu
Research Type: Poster/Presentation

Computational Approaches for the Inference of Phylogenetic Network
2021
Yufeng Wu
Research Type: Poster/Presentation

A draft genome sequence of the elusive giant squid, Architeuthis dux
2020
Simon Rasmussen, Fernando Peñaloza, L Filipe C Castro, Filipe Silva, Inger Winkelmann, Blagoy Blagoev, Thomas Sicheritz-Ponten, Tomas Vinar, Erich Jarvis, Hugo Osório, M Thomas P Gilbert, Alvarina Couto, Inigo Barrio-Hernandez, Jan M Strugnell, Mateus Patricio, Paul Gardner, Rasmus Nielsen, Qiye Li, Oleg Simakov, Tobias Baril, Yufeng Wu, Barbara Fraz√£o, Carolin B Albertin, Ricardo Tafur-Jimenez, Bent Petersen, Graham C Alexander, Jr, Agostinho Antunes, √Çngela M Ribeiro, Andre M Machado, Henk-Jan Hoving, Bin Ma, Davide Pisani, Sara Rocha, M Ziaur Rahman, Olivier Fedrigo, Brona Brejova, Yufeng Wu, Jakob Vinther, Francesco Musacchia, Alexandre Campos, Rute R da¬†Fonseca, Remo Sanges, Guojie Zhang, Alex Hayward
Research Type: Journal Article

Inference of Population Admixture Network from Local Gene Genealogies: a Coalescent-based Maximum Likelihood Approach
2020
Yufeng Wu
Research Type: Journal Article