Yufeng Wu
Professor/Computing

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Scholarly Contributions

87 Scholarly Contributions

42
Journal Articles
32
Poster/Presentations
8
Conference Proceedings
3
Other Scholarly Works
2
Books
Bounding the number of reticulation events for displaying multiple trees in a phylogenetic network
2025
Yufeng Wu, Louxin Zhang
Research Type: Journal Article

A general approach for inferring the ancestry of ancestors of an admixed individual
2024
Haotian Zhang, Yiming Zhang, Yufeng Wu
Research Type: Journal Article

Computing the Bounds of the Number of Reticulations in a Tree-Child Network That Displays a Set of Trees
2024
Yufeng Wu, Louxin Zhan
Research Type: Journal Article

Meta-analysis identifies common gut microbiota associated with multiple sclerosis
2024
Qingqi Lin, Kun Chen, Ali Mirza, Laura Piccio, David A. Hafler, Erin E. Longbrake, Howard L. Weiner, Laura M. Cox, Helen Tremlett, Yufeng Wu, Takashi Yamamura, Yanjiao Zhou, Siobhan Ni Choileain, Yair Dorsett
Research Type: Journal Article

https://doi.org/10.1186/s13073-024-01364-x
Detecting genomic deletions from high-throughput sequence data with unsupervised learning
2023
Yufeng Wu, Xin Li
Research Type: Journal Article

Alterations of host-gut microbiome interactions in multiple sclerosis
2022
Hang Xiao, Li Deng, Zhongmao Liu, Claudia Cantoni, Kun Chen, Amber Salter, Amy Lovett-Racke, Pamela Newland, Anne H Cross, Kathleen Obert, Alberto Locca, Cassandra Suther, Suresh Bokoliya, Matthew Gormley, Laura Piccio, Laura Ghezzi, Phillip I Tarr, Qingqi Lin, Yanhui Han, Yue Liu, Yeming Pan, Emily Evans, Zhengze Li, Yair Dorsett, Hunter Panier, Robert Mikesell, Yanjiao Zhou, Yufeng Wu
Research Type: Journal Article

Joint Inference of Ancestry and Genotypes of Parents from a Small Number of Children
2022
Yiming Zhang, Yufeng Wu
Research Type: Journal Article

Cardiometabolic Biomarkers and Habitual Caffeine Consumption Associate with the Adverse Ambulatory Blood Pressure Response to Strenuous Physical Exertion among Firefighters.
2022
A B Fernandez, Ming-Hui Chen, Yufeng Wu, A L Zaleski, Beth A Taylor, P M Parducci, Yi Zhang, K M Gans, Linda S Pescatello, R S Berkowsky
Research Type: Journal Article

A draft genome sequence of the elusive giant squid, Architeuthis dux
2020
Simon Rasmussen, Fernando Peñaloza, L Filipe C Castro, Filipe Silva, Inger Winkelmann, Blagoy Blagoev, Thomas Sicheritz-Ponten, Tomas Vinar, Erich Jarvis, Hugo Osório, M Thomas P Gilbert, Alvarina Couto, Inigo Barrio-Hernandez, Jan M Strugnell, Mateus Patricio, Paul Gardner, Rasmus Nielsen, Qiye Li, Oleg Simakov, Tobias Baril, Yufeng Wu, Barbara Fraz√£o, Carolin B Albertin, Ricardo Tafur-Jimenez, Bent Petersen, Graham C Alexander, Jr, Agostinho Antunes, √Çngela M Ribeiro, Andre M Machado, Henk-Jan Hoving, Bin Ma, Davide Pisani, Sara Rocha, M Ziaur Rahman, Olivier Fedrigo, Brona Brejova, Yufeng Wu, Jakob Vinther, Francesco Musacchia, Alexandre Campos, Rute R da¬†Fonseca, Remo Sanges, Guojie Zhang, Alex Hayward
Research Type: Journal Article

Inference of Population Admixture Network from Local Gene Genealogies: a Coalescent-based Maximum Likelihood Approach
2020
Yufeng Wu
Research Type: Journal Article

HPV-EM: an accurate HPV detection and genotyping EM algorithm
2020
Jin Zhang, Julie K. Schwarz, Michael D. McLellan, Yufeng Wu, Akinyemi I. Ojesina, Yufeng Wu, Matthew J. Inkman, Thomas M. Ellis, Fiona Ruiz, Kay Jayachandran
Research Type: Journal Article

InvBFM: Finding Genomic Inversions from High-throughput Sequence Data based on Feature Mining
2020
Yufeng Wu, Jingyang Gao, Zhongjia Wu
Research Type: Journal Article

Detecting Circular RNA from High-throughput Sequence Data with De Bruijn Graph
2020
Yufeng Wu, Xin Li
Research Type: Journal Article

Accurate and Efficient Cell Lineage Tree Inference from Noisy Single Cell Data: the Maximum Likelihood Perfect Phylogeny Approach
2020
Yufeng Wu
Research Type: Journal Article

Inferring the ancestry of parents and grandparents from genetic data
2020
Yufeng Wu, Rasmus Nielsen, Yiming Zhang, Jingwen Pei
Research Type: Journal Article

DeepSV: Accurate calling of genomic deletions from high-throughput sequencing data using deep convolutional neural network
2019
Yufeng Wu, Lei Cai, Jingyang Gao
Research Type: Journal Article

GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads
2019
Yufeng Wu, Chong Chu, Xin Li
Research Type: Journal Article

CLADES: A classification‐based machine learning method for species delimitation from population genetic data
2018
Xin Li, Jingwen Pei, Chong Chu, Yufeng Wu, Bin Lu
Research Type: Journal Article

An Improved Approach for Reconstructing Consensus Repeats from Short Sequence Reads
2018
Yufeng Wu, Jingwen Pei, Chong Chu
Research Type: Journal Article

Genomic Takeover by Transposable Elements in the Strawberry Poison Frog
2018
Guojie Zhang, Kyle Summers, Xu Xun, Corinne L Richards-Zawacki, Chunxue Guo, Zijun Xiong, Yufeng Wu, Matthew D MacManes, Ammon Corl, Chong Chu, Layla Freeborn, Huanming Yang, Marcus R Kronforst, Jiao Zheng, Roberto Márquez, Long Zhou, Tyler Linderoth, Rebekah L Rogers, Rasmus Nielsen
Research Type: Journal Article