Jill L. Wegrzyn
Associate Professor/Ecology and Evolutionary Bio

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Scholarly Contributions

163 Scholarly Contributions

89
Journal Articles
69
Poster/Presentations
2
Other Scholarly Works
2
Conference Proceedings
1
Book Chapter
Transcriptome Analysis Reveals Differential Gene Expression and a Possible Role of Gibberellins in a Shade-tolerant Mutant of Perennial Ryegrass
2017
Richard McAvoy, Yi Li, Xianbin Gu, Jill Wegrzyn, Chandra Thammina, Wei Li, John inguagiato, Rania El-tanbouly, Huseyin Yer, Lorenzo Katin-Grazzini, Xiaojing Wang, Tingting Gu, Karl Guillard
Research Type: Journal Article

The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae
2017
Claudio Casola, Marc W. Crepeau, Nicholas C. Wheeler, Steven L. Salzberg, Sumaira Zaman, U. Uzay Sezen, Patrick E. McGuire, Daniela Puiu, Kristian A. Stevens, Geo M. Pertea, Charles H. Langley, Carson Holt, Jill Wegrzyn, Daniel Gonzalez-Ibeas, Charis Cardeno, James A. Yorke, Tomasz E. Koralewski, David B. Neale, Richard Cronn, Robin Paul, Mark Yandell, Aleksey V. Zimin
Research Type: Journal Article

Expression profiling in Pinus radiata infected with Fusarium circinatum
2017
Andrea Donoso, Sofía Valenzuela, Jill Wegrzyn, Ricardo Durán, Victoria Rodriguez, Angela Carrasco, David Neale, Marta Fernández
Research Type: Journal Article

An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing
2017
Marc W. Crepeau, Steven L. Salzberg, Kristian A. Stevens, Jill Wegrzyn, Aleksey V. Zimin, James A. Yorke, Charles H. Langley, Daniela Puiu, David B. Neale
Research Type: Journal Article

When local means local: Polygenic signatures of local adaptation within whitebark pine (Pinus albicaulis Engelm.) across the Lake Tahoe Basin, USA | bioRxiv
2017
Jill Wegrzyn
Research Type: Journal Article

ChloroMitoCU: Codon patterns across organelle genomes for functional genomics and evolutionary applications
2017
Kinshuk C. Nayak, Ruei-Chi Gan, Chi-Ching Lee, Jill Wegrzyn, Ting-Wen Chen, Nicola L. Porta, Petrus Tang, Gaurav Sablok, Claudio Varotto, Po-Jung Huang, Chi Yang
Research Type: Journal Article

New extension software modules to enhance searching and display of transcriptome data in Tripal databases
2017
Jill Wegrzyn, Xiao Zhou, Ming Chen, Nathan Henry, Stephen Ficklin, Abdullah Almsaeed, Margaret Staton
Research Type: Journal Article

Computational approaches to decode megagenomes and understand adaptation in forest trees
2017
Jill Wegrzyn
Research Type: Poster/Presentation

P0398 Bioinformatic Evaluation of Transcriptomic Frame Selection Methods in Non-Model Species
2017
Cera Lawrence, Jeanne Whalen, Sumaira Zaman, Sanjuro Jogdeo, Jill Wegrzyn, Richard Cronn
Research Type: Poster/Presentation

P0467 GenSAS v5.0: Structural and Functional Annotation Using a Web-Based Platform for Model and Non-Model Organisms
2017
Sook Jung, Stephen P Ficklin, Dorrie Main, Heidi Hough, Jodi L Humann, David B Neale, Taein Lee, Jill Wegrzyn, Chun-Huai Cheng
Research Type: Poster/Presentation

P0360 TreeGenes: Genetic and Genomic Resources for Forest Trees
2017
Qiaoshan Lin, Steven A Demurjian Jr., Damian Gessler, Dorrie Main, Stephen P Ficklin, Michael Wynne, Margaret Staton, Alex Feltus, Jill Wegrzyn, Emily Grau, Nic Herndon
Research Type: Poster/Presentation

P0473 Enhancement of Data Searching, Visualization and Exploration in the Hardwood Genomics Database (HGD) by Integration of New Tripal Extensions and Galaxy
2017
Ming Chen, Xiao Zhou, Stephen P Ficklin, Nate Henry, Anthony Bretaudeau, Margaret Staton, Jill Wegrzyn, Thomas Lane
Research Type: Poster/Presentation

C26 Elasticsearch Indexing/Search and Expression Data Visualization with Two New Tripal Extension Modules
2017
Ming Chen, Nate Henry, Stephen P Ficklin, Margaret Staton, Jill Wegrzyn, Xiao Zhou, Thomas Lane
Research Type: Poster/Presentation

Computational Approaches to decode megagenomes and develop database resources for the forest tree community
2017
Jill Wegrzyn
Research Type: Poster/Presentation

P0479 A Novel Tripal Database Module and Workflow to Facilitate Variant Mapping and Detection in Non-Model Plant Species
2017
Stephen P Ficklin, Dorrie Main, Jill Wegrzyn, Nic Herndon, Sook Jung, Alex Feltus, Emily Grau, Qiaoshan Lin, Margaret Staton
Research Type: Poster/Presentation

W352: A Reference Draft Genome for Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco)
2017
Jill Wegrzyn, Sumaira Zaman, Daniela Puiu, Charles H Langley, Pat McGuire, Daniel Gonzalez-Ibeas, Robin Paul, Mihaela Pertea, U Uzay Sezen, Nicholas Wheeler, Claudio Casola, Richard Cronn, M Yandell, Steven L Salzberg, Kristian A Stevens, Tomasz Koralewski, James A Yorke, Carson Holt, Marc Crepeau, Gaurav Sablok, Aleksey Zimin, Charis Cardeno, David B Neale
Research Type: Poster/Presentation

W080 Structural and Functional Annotation of Model and Non-Model Organisms with GenSAS v5.0, a Web-Based Annotation Platform
2017
David B Neale, Sook Jung, Jill Wegrzyn, Taein Lee, Jodi L Humann, Chun-Huai Cheng, Stephen P Ficklin, Heidi Hough, Dorrie Main
Research Type: Poster/Presentation

P0358 TreeGenes and CartograTree: Genetic and Genomic Resources for Forest Trees
2017
Michael Wynne, Margaret Staton, Qiaoshan Lin, Damian Gessler, Nic Herndon, Steven A Demurjian Jr., Dorrie Main, Alex Feltus, Stephen P Ficklin, Jill Wegrzyn, Emily Grau
Research Type: Poster/Presentation

P0582 Towards Genomic Selection in Pine Breeding
2017
Richard Sniezko, Juan Jose Acosta, Trevor Walker, Andrew J Eckert, Jill Wegrzyn, Fikret Isik
Research Type: Poster/Presentation

W956 Tripal Introduction and Core Development Efforts
2017
Jill Wegrzyn, Ming Chen, Sook Jung, Dorrie Main, Margaret Staton, Alex Feltus, Lacey-Anne Sanderson, Stephen P Ficklin, Kuang-Ching Wang, Connor Wytko, Brian Soto, Chun-Huai Cheng, Nick Watts
Research Type: Poster/Presentation